- Invoke Barplot in the primary console:
to get a barplot menu:
- Make the following selections:
- After clicking the OK button in the above menu,
we'll get the following menu to specify
how to draw a trellis graph:
Panmo remembers the settings of Panel Order, Strips?, Packet Size Bars?, and Abbreviation Threshold used last time. If you are actually running Panmo
to follow this tutorial step by step,
what you see on your computer might not be the same as this
screen shot.
Adjust the settings of these 4 parameters to be
the same as those shown here.
- We move Wellfrom the attributes column to the selected attributes column by
- Drag and drop, or
- Click the left mouse button on it and press the S key on the keyboard.
After we do that, this trellis menu will become:
Note that Well is printed on a light yellow background
because it is a categorical variable.
Numerical variables are printed on a light blue background.
Also note that the number of columns and the number of panels
are updated to 48 automatically because Well has 48 different categories.
- Adjust the settings of Columns and Rows to 12 and 4, respectively:
- Click the OK button in the above trellis menu to get
a plate view of cell numbers,
which is essentially a trellis graph of barplots of Observation color.
Recall that columns 1, 2, & 3 were control,
columns 4, 5, & 6 were treated by taxol,
columns 7, 8, & 9 were treated by nocodazole, and
columns 10, 11, & 12 were treated by etoposide.
NOTE:If the cells in your data are not all of the same color,
you won't get a plate view of cell numbers like the above one,
where there is only 1 filled rectangle in each well.
For example, you might get plate view like the following:
There are many ways to make all cells in the above plate
view be of the same color.
For example,- You can paint them with a blue paint brush or
- You can click the Color button in the primary console and pick a color.
No matter how you do it, the above plate view will
automatically update its appearance to reflect any color
changes done to the cells.
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